Protein Info for Psyr_0399 in Pseudomonas syringae pv. syringae B728a

Annotation: LSU ribosomal protein L31P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 73 PF01197: Ribosomal_L31" amino acids 1 to 65 (65 residues), 101.9 bits, see alignment E=8.7e-34 TIGR00105: ribosomal protein bL31" amino acids 1 to 66 (66 residues), 108 bits, see alignment E=9.4e-36

Best Hits

Swiss-Prot: 100% identical to RL31_PSEU2: 50S ribosomal protein L31 (rpmE) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K02909, large subunit ribosomal protein L31 (inferred from 94% identity to pst:PSPTO_5136)

MetaCyc: 61% identical to 50S ribosomal subunit protein L31 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZF3 at UniProt or InterPro

Protein Sequence (73 amino acids)

>Psyr_0399 LSU ribosomal protein L31P (Pseudomonas syringae pv. syringae B728a)
MKADIHPVYEAIDATCSCGNVIKTRSTLAAPLSLDVCNECHPFYTGKQKMLDVGGRVDKF
KSRFGAFGATKAK