Protein Info for Psyr_0346 in Pseudomonas syringae pv. syringae B728a

Annotation: Acriflavin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 390 to 414 (25 residues), see Phobius details amino acids 429 to 452 (24 residues), see Phobius details amino acids 464 to 492 (29 residues), see Phobius details amino acids 523 to 543 (21 residues), see Phobius details amino acids 855 to 874 (20 residues), see Phobius details amino acids 882 to 900 (19 residues), see Phobius details amino acids 906 to 929 (24 residues), see Phobius details amino acids 957 to 976 (20 residues), see Phobius details amino acids 982 to 1007 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1004 (997 residues), 554.6 bits, see alignment E=2e-170

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfl:PFL_0238)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZK4 at UniProt or InterPro

Protein Sequence (1033 amino acids)

>Psyr_0346 Acriflavin resistance protein (Pseudomonas syringae pv. syringae B728a)
MKGNFNLSEWAIKHQSFVWYLMFVALLMGVFSYMKLGREEDPSFTIKTMIIQTRWPGATV
DETLEQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLRDTTSAKAIPEIWYQVRKKVD
DIRGQFPQGLQGPSFNDEFGDVYGSIYAFTADGFSMRQLRDYVEKVRADIRDVPGLGKVE
MIGQQDEVVYLNFSTRKLAALGIDQSQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFA
SEKDLAAVNLRINDRFYRLSDIADITRGYTDPPKPLFRFDGKPAIGLAIAMQKGGNIQSF
GKALHERMDATTAELPVGIGVHKVSDQAEVVNKAVGGFTSALFEAVIIVLLVSFVSLGFR
AGLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTRLEMG
ESKEQAATYAYTSTAFPMLTGTLVTVAGFVPIGLNNSSAGEYTFTLFAVIAVAMLVSWVV
AVLFAPVIGVHILSANIKPKSEEPGRIGRAFNGSMLWAMRHRWLAIAITVGLFAASLFSM
QFVQNQFFPSSDRPEILVDLNLPQNASINETRKVVDRFEASLNDDPDIERWSTYIGQGAL
RFYLPLDQQLENPFYAQLVIVSKGLEERGALTARLQKRLRDDFVGIGSYVQALEMGPPVG
RPLQYRVSGENIDKVRQHAIELATLLDHNPHVGEVIYDWNEPGKVLRIDINQDKARQLGL
SSEDVAKLMNSVVSGSTVTQVRDDIYLINVVGRAEDAERGTPETLQNLQIVTPTGTSIPL
LAFATVGYELEQPLVWRRDRKPTITVKGAVRDAIQPTDLVKQLQPEIDKFAAGLPVGYKV
ATGGTVEESSKAQGPIASVAPLMLFLMATFLMIQLHSIQKMFLVASVAPLGLIGVVLALI
PTGTPLGFVAILGVLALIGIIIRNSVILVTQIDAYEKSGYLPWDAVVEATEHRRRPILLT
AAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYRIKEPTDEQRREA
ADKDEGEHAQPAH