Protein Info for Psyr_0336 in Pseudomonas syringae pv. syringae B728a

Annotation: Outer membrane autotransporter barrel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 995 PF01569: PAP2" amino acids 125 to 231 (107 residues), 45.9 bits, see alignment E=7e-16 TIGR02601: autotransporter-associated beta strand repeat" amino acids 393 to 421 (29 residues), 35.4 bits, see alignment (E = 6.9e-13) amino acids 458 to 489 (32 residues), 28.1 bits, see alignment (E = 1.3e-10) PF12951: PATR" amino acids 394 to 422 (29 residues), 34.9 bits, see alignment (E = 1.9e-12) amino acids 459 to 488 (30 residues), 30.2 bits, see alignment (E = 5.5e-11) TIGR01414: outer membrane autotransporter barrel domain" amino acids 524 to 995 (472 residues), 167.2 bits, see alignment E=6.6e-53 PF03797: Autotransporter" amino acids 726 to 975 (250 residues), 220 bits, see alignment E=7e-69

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0336)

Predicted SEED Role

"Autotransporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZL4 at UniProt or InterPro

Protein Sequence (995 amino acids)

>Psyr_0336 Outer membrane autotransporter barrel (Pseudomonas syringae pv. syringae B728a)
MDLLSGFNTLWTTGATWDTGTPTALGQSLLRRNLQIVVDRANSRTLAQETAAYFDDRRDQ
SYSAISGLGSLSDAYKAGAGAFTTITQFDDSNKTVRYDDKGNGAGSSSSALGKVVDLVGA
VRNDASTTPAKSHYLYPRPWRQSLDGQSLAFVVAPSLRPAESTTPASDSGFPSGHTNAAY
LSAYALAYAIPERFSELMLRASEIGDNRIEAGMHSPFDVMGGRITATYFAIDNLSNPANA
QLRADARAQALAYFTAQCGGNVNNCMTAIDPATDRTSQHAQDKALYTARMTYGFDPVGPT
NLAPVVPTNAEVLLETRFPYLDASQRREILATTELSSGYAVIDQSGGYGRLNLYAAGDGY
GAFNSNVTVNMNASLGGYNAIDAWRNDISGSGALIKNGTGNLILTGNNTYSGGTLIKGGT
LTGHAQAFGSGTITDNATLVVDQSTNDTLANTLTGNGALIKRGVGSLNLTGNSSLSGATT
VQAGRLAVNGSLGNSIVSVQQGATLGGNGTVGGINVAQGGVVAPGNSVGQLNVNGDVNLA
QGSVYQVESDASGKADRIVASGRATINNSTLSLVEGGNWLAASRYSILSAAGGVSGAFAA
VQTNFAFLTPTLNYTATDVGLTLDRNAQTFASLAPTRNAKAVAQGLDSAGAGNALWRQVV
QDDASTAQATFSALSNELHASTQSALIEDSRLVRNAMNARMQQAQSAQAFGSTTQTLAGD
ASRGVVWTQAIGATGQTDSSRDASGLETRTSGLLFGADVPLDDTWRVGALAGFSNSSFDL
RHASGSTDSDNYHLGVYGGAKWGQLGLRLGAVRTWHELTAKRTLDLPGSSEHFKEDYKAA
TNQVFGELGYTLEMGNAQLEPFANLAHVRLDTDAFDENSNAISLQNKSQDNHITFSTLGL
RAATHLSAGNVVIKPNATLGWRRTYGDVTPESRSAFSGGSTFELSGAPIARSAAVLGAGV
DLGLSDTLSVGLSYDGQVSNDASDQSLNARVTLAF