Protein Info for Psyr_0280 in Pseudomonas syringae pv. syringae B728a

Annotation: Catalase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 716 PF00199: Catalase" amino acids 49 to 433 (385 residues), 600.4 bits, see alignment E=3e-184 PF06628: Catalase-rel" amino acids 465 to 530 (66 residues), 76.7 bits, see alignment E=2.5e-25 PF18011: Catalase_C" amino acids 565 to 708 (144 residues), 64.3 bits, see alignment E=2e-21 PF01965: DJ-1_PfpI" amino acids 566 to 673 (108 residues), 40.5 bits, see alignment E=5.2e-14

Best Hits

Swiss-Prot: 76% identical to CATE_PSEPU: Catalase HPII (katE) from Pseudomonas putida

KEGG orthology group: K03781, catalase [EC: 1.11.1.6] (inferred from 100% identity to psb:Psyr_0280)

Predicted SEED Role

"Catalase (EC 1.11.1.6)" in subsystem Oxidative stress or Photorespiration (oxidative C2 cycle) (EC 1.11.1.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.11.1.6

Use Curated BLAST to search for 1.11.1.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZR9 at UniProt or InterPro

Protein Sequence (716 amino acids)

>Psyr_0280 Catalase (Pseudomonas syringae pv. syringae B728a)
MASKNAPPVTETPKSEMAGTDTLDRGNTNEKLESLEQFRSDATQQALRTNHGVKISDNQN
TLKVGSRGPSLLEDFIMREKITHFDHERIPERIVHARGTAAHGYFQTYEDHGALSKAGFL
RDPGKKTPVFVRFSTVQGPRGSGDTVRDVRGFAVKLYTDEGNFDLVGNNMPVFFIQDAIK
FPDFVHAVKPEPHNEIPTGGSAHDTFWDFVSLVPESAHMVLWTMSDRAIPKSLRTMQGFG
IHTFRFINTEGKSSFVKFHWKPKFGVCSLVWDEAQKLAGKDTDFHRRDLWESIEMGDYPE
WELGVQIVAEEDEHKFDFDLLDPTKIIPEELVPVTPLGKMVLNRNPDNYFAETEQVAFCP
GHIVPGIDFSNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPIAPNHNGQRDAQHRTTI
DKGRASYEPNSIDGGWPKETPAGPVDGGFETYPERVEAHKVRERSESFGDHFSQATLFFQ
SMSHHEKEHIIAAYSFELGKVEREYIRARQVNEILANIDMDLAKRVAANLGLPAPAAGTV
PARQTSVKESPALSQVNLLSGDIVSRKVAILVADGVDGKAVEAMKAALTAEGAHAKVLGP
TSAPVKTADGKSLPVDASAEGLPSVAFDAVFVPGGKASIEALKGDGVALHFILEAYKHLK
AISFAGEAKELLSLLRLEEDAGLLEVSDSTSFKPFFHAIAQHRVWDREAKAKAVPA