Protein Info for Psyr_0154 in Pseudomonas syringae pv. syringae B728a

Annotation: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 PF00005: ABC_tran" amino acids 25 to 183 (159 residues), 75.4 bits, see alignment E=2.8e-24 amino acids 300 to 452 (153 residues), 108.1 bits, see alignment E=2.3e-34 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 503 to 591 (89 residues), 46.6 bits, see alignment E=4.4e-16 PF08352: oligo_HPY" amino acids 503 to 570 (68 residues), 43.5 bits, see alignment E=1.3e-14

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to psb:Psyr_0154)

Predicted SEED Role

"ATPase components of various ABC-type transport systems, contain duplicated ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q500E5 at UniProt or InterPro

Protein Sequence (613 amino acids)

>Psyr_0154 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal (Pseudomonas syringae pv. syringae B728a)
MSQLIRVQDLRVVADGDHGELEIVKGVSFALEKGEVLALIGESGSGKTTIALALLGYARR
GCKLAGGVVQVGAHDMLSLPESQLQGLRGNRVSYIAQSAAAAFNPAKKLIDQVIEGALIH
GLGSRAELEAKAVELFRDLALPNPESIGRRYPHQVSGGQLQRVMAAMALISDPLLVILDE
PTTALDVTTQIDVLRAFKRVVRDRGATAVYVSHDLAVVAQMADQIVVLNGGRIIEQSSTA
ALLKGPVDAYSRSLLAAARPDKVLSPASEVVKDSTLLTIKGLTAGYGKKNLQGMPMIRVL
EDIDLTIRRGQAIGVIGESGSGKSTLARVVAGLLDPAHGSLTFDGADLSGTLAGRTEEQF
RRIQMVFQNADTALNPMHSISAILARPLKMYFGLKGRALRERIDELMDLVRLPRELAERR
PNELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVGACILELLGELRRKLGVSYLFI
SHDISTVRALCDDIVVMYSGHKVEEGSREAFSRVPFHPYTDLLVHSVPELRQGWLETCGV
TSGNLPPISAPANNPELCTFLNRCPARIEGLCNKTAPGRRLIAGGSEILCHRDSDELQAV
QENLNPETVGAYA