Protein Info for Psyr_0124 in Pseudomonas syringae pv. syringae B728a

Annotation: Hemolysin-type calcium-binding region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 PF08548: Peptidase_M10_C" amino acids 37 to 131 (95 residues), 27.7 bits, see alignment E=2.2e-10 amino acids 220 to 326 (107 residues), 28.1 bits, see alignment E=1.7e-10 amino acids 374 to 496 (123 residues), 42 bits, see alignment E=9.5e-15 PF00353: HemolysinCabind" amino acids 39 to 72 (34 residues), 27.2 bits, see alignment (E = 3e-10) amino acids 67 to 91 (25 residues), 18.2 bits, see alignment (E = 2e-07) amino acids 195 to 229 (35 residues), 39 bits, see alignment 6.3e-14 amino acids 217 to 238 (22 residues), 22.6 bits, see alignment (E = 8.6e-09) amino acids 354 to 381 (28 residues), 21.8 bits, see alignment (E = 1.5e-08) amino acids 364 to 399 (36 residues), 41.5 bits, see alignment 1e-14 amino acids 374 to 407 (34 residues), 34.8 bits, see alignment (E = 1.3e-12)

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0124)

Predicted SEED Role

"FIG00965878: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q500H5 at UniProt or InterPro

Protein Sequence (515 amino acids)

>Psyr_0124 Hemolysin-type calcium-binding region (Pseudomonas syringae pv. syringae B728a)
MTQTVDIKDVTNPTALANLQVARATSQVSNNPIELIVQGTPGNDSLRGGLANELLMGGDG
NDYIVSGGGNDVMVPGAGADSLSGGAGNDVFRFERISDSYINGAGESTDSISYFDPAHDI
LDVSALGYSHLGNGYGDTLHIRSEPLRGIYFLESYERDQNGHRFAVQFLANSGVITDANL
QPLINGTSQSNLLVGTDGSETLKAGAGRDTVEAGADNDRLFGGAGGDTLSGGAGADTFVY
TRLSDSYRNDASGSYSSRDLITDFSGNGHDMIDVSALGFTGLGNGYNGTLKAVLNLAGDA
TALKSLEADANGNRFEILLSGNHVNELNASTVLFAPPSDATVVTSPQPITPVNLAGGDKS
EKLYGYWGNDTLAGGAGNDILEGNAGDDVLTGGLGADKLTGGTGNDRFVFTSSADSHAGS
SDLITDFIWGQDKLDVAALGVTGFGNGRDGTLSMTYDENTDRTYLRSREPGADGHAFQVT
LVGFDYTRELTNADLVVADTADVALVGQTAVDLAS