Protein Info for Psyr_0115 in Pseudomonas syringae pv. syringae B728a

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 29 to 49 (21 residues), see Phobius details amino acids 55 to 78 (24 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 199 to 218 (20 residues), see Phobius details amino acids 224 to 251 (28 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0115)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q500I3 at UniProt or InterPro

Protein Sequence (254 amino acids)

>Psyr_0115 membrane protein, putative (Pseudomonas syringae pv. syringae B728a)
MTAFYLKLLITPALMLAISLAARRWGTGVAGLLSGLPMTSALVMLFLSLEQGTQFASMAV
PGALAGLAAIQATYLFYFLITRHVSALTGCVLALAVYGATAFLMNLSGLLALSIIFTLLM
VALIIVATSKQTPPDVASYVALPRWVIPMRMLTATLLLLAITASATWLGPVVSGLLAPIP
VIAWPLAVFVHVQGGRYELAAIICGNAIGAVGVVSFYLTLRYSILQWGALLSIAAAVLLA
VVVTAGLARLLARR