Protein Info for Pf6N2E2_950 in Pseudomonas fluorescens FW300-N2E2

Annotation: Type IV secretory pathway, VirB4 components

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 916 TIGR03744: conjugative transfer ATPase, PFL_4706 family" amino acids 26 to 913 (888 residues), 1490.1 bits, see alignment E=0 PF11130: TraC_F_IV" amino acids 37 to 307 (271 residues), 202.9 bits, see alignment E=2.7e-64

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_3023)

Predicted SEED Role

"Type IV secretory pathway, VirB4 components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZSQ5 at UniProt or InterPro

Protein Sequence (916 amino acids)

>Pf6N2E2_950 Type IV secretory pathway, VirB4 components (Pseudomonas fluorescens FW300-N2E2)
VRTGDSGNRTSAWKAWRHPLHPRATLADEAAMYAHNPSFTDHLPWVEYLDTEQCFLLDDN
RSVGAVFELLPIGTEGREPDWLMAARDALEDALQDSFDELDQAPWLAQFFCQDDNNFIPY
LTRLTDYIRDSARGTVFTEAYLELSRRHLKAVAKPGGLFEDKVVTRLPWRGNNRRVRLVV
YRWLESDAEETGLTPVQSLQQACERIAASLKACGVQSTRVDGRSLYAWLVPWFNPAPTLT
NEAPEEFYHRVAYPESGNGESLELPFDHDFAERLFFNEPRSDVQHGLWFFDDQPHRVMVV
DKLRRAPLIGQLTGETRKGDAVNALFDQLPEGTVMSLTLVVKPQDVLEDQLNRLARKAIG
ENLASTQTRQDVEEARAIIGRQHKLYRGTLAFYLRGHDEQQLHQRSVSLANALLGAGLQP
VREGDEVAACNSYLRWLPMAYNPARDTRNWYTRLMFAQHLANLVPVWGRSTGTGHTGITL
FNRGGSPLSFDPLSRLDRAMNGHLLLFGPTGAGKSATLVTLLMQIMAVYRPRLFIVEAGN
SFGLQGDYFATQGLSVNKVQLKPGASVSLAPFADAWRLIEQPDEVASLSIDELDDEAVAS
REDQRDVLGELEITARLMITGGEAKEEARLSRADRSLIRECILDAAQTCVAANRQVLTRD
VRDALLRVAADPHLPEKRRERAQEMGESIDLFCQGFEGELFNREGTPWPESDVTIVDLAT
YAREGYEAQMSISYISLMNTVNNLAERDQYLDRPIIMVTDEGHIITKNPLLAPFVVKGTK
MWRKLGAWFWLATQNLADFPTAAQTMLNMIEWWICLNMPPAEIEEIARFKKLSPAQKALL
LSASKEPGKYTEGVVLSKKLETLFRAVPPSLYLALAMTEPEEKAERWTLMQENGCSELEA
AFQVAERIDRARGIGT