Protein Info for Pf6N2E2_909 in Pseudomonas fluorescens FW300-N2E2

Annotation: VrlR-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 191 PF08878: HamA" amino acids 5 to 127 (123 residues), 42 bits, see alignment E=5.3e-15

Best Hits

Predicted SEED Role

"VrlR-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (191 amino acids)

>Pf6N2E2_909 VrlR-like protein (Pseudomonas fluorescens FW300-N2E2)
LINGLLPQTPQIRSGDLGEIYATEWINAHSGYRAPIKRLRWKDHRNMAMRGDDVIGMLLD
PATLRLKFLKTEAKSRIDLRAQTLNEARAGLDKDEGRPSAHALSFISARLLDLDNIPLVD
AIDDALVRHGIPLENVQHLLFTFSGNAPGALLSQSLQAYPGTINQWAVGLQVDGHAAFVG
AIYDRVIADGN