Protein Info for Pf6N2E2_898 in Pseudomonas fluorescens FW300-N2E2

Annotation: putative major facilitator superfamily (MFS) transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 34 to 59 (26 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 153 to 175 (23 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 236 to 257 (22 residues), see Phobius details amino acids 277 to 297 (21 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 343 to 366 (24 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details amino acids 400 to 401 (2 residues), see Phobius details amino acids 403 to 427 (25 residues), see Phobius details PF07690: MFS_1" amino acids 38 to 327 (290 residues), 118.4 bits, see alignment E=3.5e-38 PF00083: Sugar_tr" amino acids 68 to 217 (150 residues), 95.7 bits, see alignment E=3.1e-31 amino acids 229 to 435 (207 residues), 32.3 bits, see alignment E=5.3e-12

Best Hits

KEGG orthology group: None (inferred from 81% identity to rpf:Rpic12D_1553)

Predicted SEED Role

"putative major facilitator superfamily (MFS) transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161H5F7 at UniProt or InterPro

Protein Sequence (439 amino acids)

>Pf6N2E2_898 putative major facilitator superfamily (MFS) transporter (Pseudomonas fluorescens FW300-N2E2)
MKTLAASSTAQAPVVNGVGQLTANQRYVTLGGSWAAWLFDALDATVFGFVLLAVAQTFAV
GLGDVVSTVAWFLLATGIGGFFLGNISDKIGRKKTMMLSVFVYGTGTLLCAFADSLWQLN
VFRFCVGIAVGGLWSAAAALVSEIWPVAGRAKAFALMQTGWSGGGLLAAIFAWTFLDGGN
PESWRNLFIYASIPAYFTLVFIWLFVKESPVWMANREFMRNNSDKGRLMEIFRPQYLKVT
LLGLSISVLGMYGYWIITTFMPVYLQSILNVRIDQAPVFVIWIGIGATIGYLAYGYLAES
IGRRLSFAVFFGGMAIMVPVFAYSATLMPLTDGKLLFTTQNVITLGLLAALLGFFTGYFS
GFGAWYSELFPTSIRSTASGFCFNFGRVGAIAGIKLVPVLIPLIGFTATISLASVSYVIA
AVMVFTLQETKGVQLTSGN