Protein Info for Pf6N2E2_673 in Pseudomonas fluorescens FW300-N2E2

Annotation: Probable permease of ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 79 to 102 (24 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 147 to 147 (1 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 13 to 107 (95 residues), 59.3 bits, see alignment E=2.2e-20 PF00528: BPD_transp_1" amino acids 32 to 212 (181 residues), 54.4 bits, see alignment E=6.9e-19

Best Hits

KEGG orthology group: K10040, putative glutamine transport system permease protein (inferred from 100% identity to pba:PSEBR_a3204)

Predicted SEED Role

"Probable permease of ABC transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZRP0 at UniProt or InterPro

Protein Sequence (216 amino acids)

>Pf6N2E2_673 Probable permease of ABC transporter (Pseudomonas fluorescens FW300-N2E2)
MFSTSLSVNDLLYLLEGAWVTLQLTVWSILLGTLAGLLFGLLRALLPRASLPLAWLLDVF
RSVPLLIQFVLFNSLKSIAGLNLSAFAVGCIVLGVYAAAYFTEIVRGGVLAVPSSTRRAS
RSLGLSYVQDLRFIVLPIATRVAFPGWLNLVLGVMKDTALVMWIGIVELLRASQTIVTRI
QEPLLVLCIAGLIYYVMSLVVARLGARLERRWQEND