Protein Info for Pf6N2E2_649 in Pseudomonas fluorescens FW300-N2E2

Annotation: General secretion pathway protein L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 230 to 253 (24 residues), see Phobius details PF12693: GspL_C" amino acids 230 to 343 (114 residues), 51.8 bits, see alignment E=4.4e-18

Best Hits

KEGG orthology group: K02461, general secretion pathway protein L (inferred from 92% identity to pba:PSEBR_a3230)

Predicted SEED Role

"General secretion pathway protein L"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YVN6 at UniProt or InterPro

Protein Sequence (390 amino acids)

>Pf6N2E2_649 General secretion pathway protein L (Pseudomonas fluorescens FW300-N2E2)
MTRLRIALAPLDSLDLDSPVAFAWLDRQGQVREQGRSSLRALGQSGKNLSVECFLHPRDS
VLTRLELPLLPAARITAAVTCAAQALMLGASEQMQVAHGPRGVDGQVQIAWLDRESLANL
GRLVHQAGMKLRGLYPAAYVLPVLSGPVACIEDDHLLVRHDLQHAVVQPLQQEALEEWLL
ETGPGVHWVGEAPPQPSIEALAETHRWMGPAPGWGLHAGLARNAVERGGWGRAAAICATA
LAVWVIGLNLYAAREAAQGQRLKAQMSQRVKQAFPELPVILNPLQQARQQIAARQDGAAT
DPAQRFASLVQQAGSAMPFMSGNVQALVFENGELRLSVVAEAQKTAAEEDWKIPLVQAGI
DVAAIDQGWTLRVAPAGQGSPDENPDADDE