Protein Info for Pf6N2E2_5913 in Pseudomonas fluorescens FW300-N2E2

Annotation: Similar to TadZ/CpaE, associated with Flp pilus assembly

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 transmembrane" amino acids 10 to 29 (20 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details PF07811: TadE" amino acids 8 to 50 (43 residues), 43 bits, see alignment E=1.9e-15

Best Hits

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a4089)

Predicted SEED Role

"Similar to TadZ/CpaE, associated with Flp pilus assembly" in subsystem Widespread colonization island

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZS82 at UniProt or InterPro

Protein Sequence (164 amino acids)

>Pf6N2E2_5913 Similar to TadZ/CpaE, associated with Flp pilus assembly (Pseudomonas fluorescens FW300-N2E2)
MNHKHMRGTYIVEFSFVGLLVFILLFGVVEMGRLYFTVNALDEAARRGVRLAAVCNISDP
VVLRRAIFNAATDAGTSQLITSLATTNLALTYLDVNGAVVANPADTSGANGFRAIRYVRL
SVENFVFNLFIPGLGVPITLPAFRATLPRESLGRHSDSGEITPC