Protein Info for Pf6N2E2_5548 in Pseudomonas fluorescens FW300-N2E2

Annotation: Cyanate transport protein CynX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 137 to 159 (23 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 246 to 267 (22 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 301 to 323 (23 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details signal peptide" amino acids 31 to 31 (1 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 347 (320 residues), 104.8 bits, see alignment E=2.3e-34

Best Hits

Swiss-Prot: 39% identical to CYNX_ECOLI: Cyanate transport protein CynX (cynX) from Escherichia coli (strain K12)

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 98% identity to pba:PSEBR_a4430)

Predicted SEED Role

"Cyanate transport protein CynX" in subsystem Cyanate hydrolysis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A233 at UniProt or InterPro

Protein Sequence (395 amino acids)

>Pf6N2E2_5548 Cyanate transport protein CynX (Pseudomonas fluorescens FW300-N2E2)
MENIRTSTTHAIWLMVSIVLVALNLRPSMAAVGPLLSAIRGEVPLSFSTASLLTMLPVMA
MGLAMFLGMRIALRIGEHRTIVLSLLIIGIATASRLYLDSAAGLIASAIVAGLGIALIQA
VMPALIKSRFADNVSLFMGLYVTSIMGGAAIAASFSPFVLTQTGSWRVGLAIWALLALVA
LGCWYAQRSNITPLPEAASRHHEAFSRNARAWLLAIFFGLGTASYTCVLAWLAPYYVEKG
WSEQHAGLLLGFLTAMEVLSGLVTPAIANRSRDKRLVLSVLLALIIGGFCGLILSPERFS
LLWACLLGLGIGGLFPMSLIVSLDHLDNPRRAGGLTAFVQGVGYLIAGLSPLIAGMIRDQ
LGSFEWAWWSLTAVMALMMVMVLRLDPKHYGQHIR