Protein Info for Pf6N2E2_5458 in Pseudomonas fluorescens FW300-N2E2

Annotation: Transposase and inactivated derivatives

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 121 PF01797: Y1_Tnp" amino acids 21 to 99 (79 residues), 42.3 bits, see alignment E=3.9e-15

Best Hits

KEGG orthology group: None (inferred from 54% identity to pmk:MDS_4013)

Predicted SEED Role

"Transposase and inactivated derivatives"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (121 amino acids)

>Pf6N2E2_5458 Transposase and inactivated derivatives (Pseudomonas fluorescens FW300-N2E2)
MPIFKDLRLGRLLIAEMRLAHEQGQVNSLAWVVMPDHLHWLVQLERAQLSRVMQTIKSRS
TLTINRAMNRTGAFWQSGFHDCAIRDNQSLRPAADYITANPIRAGLVEHIGDYPHWDTAW
I