Protein Info for Pf6N2E2_5457 in Pseudomonas fluorescens FW300-N2E2

Annotation: Membrane carboxypeptidase (penicillin-binding protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 36 to 54 (19 residues), see Phobius details PF00912: Transgly" amino acids 157 to 358 (202 residues), 62.2 bits, see alignment E=4.4e-21

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a4519)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A1Y4 at UniProt or InterPro

Protein Sequence (1035 amino acids)

>Pf6N2E2_5457 Membrane carboxypeptidase (penicillin-binding protein) (Pseudomonas fluorescens FW300-N2E2)
MGALWQTDSNEPVVPTERMEEAPLPQKKRRARHGWRAFWLLLLIIVVVVGLAVAKEMRTS
RFQAQEISKYAASLSYSVQPGPSDAIIYPGAGPFDRRLGYSSLGEFLPRLLKRDYVIQAQ
ARFSPALMDYVEKGLFVPYAEKIQAGLTITDCRAAPVYQFKYPQQLYANFDAIPPVVVQS
LLFIENRFLLDPKQPLANPAVDWPRFAMAAWSQVAKLLSLPGQSAGGSTLATQLEKYRHS
PEGLTVSGGEKIRQMISASVRAYQAGPQTLEARQRIIRDYLNSVPLSAVPGHGEVHGMAE
GLRVWYGADFKRANERLSSAANDPKSLAEKGLALREMLSLMIAQRRPSHYLSKGHEELAR
LTDSHIRLLAQNGVIDAALSEAALASQVSYRDWVQDPTVQPNETNKGISAARSRLATLLN
RPLYDLDRLDLSATSTLQSDLQAQATEYLKRLADPAFAAEIGLMGERLLTPTSTTQVRYS
FTLLELTPDGSRVRVQTDSTDQPFDINEGSKLELGSTAKLRVLTTYLQIIAELHERYAEQ
TPAALKKADIAEQDRLSRWAVDYLIQNTDRSLPKMLEAALDRTYSASPGEAFFTGGGLHT
FHNFRNEDNGRNPTLRDALRESINLPFIRLMRDLVRYATYAGPNNSSELLKDDKDPRRQE
YLAQFADREGTSFLLRFWKKYQKKDTSQRLETFLDGMRPTAIRLAAVHRYFFPGDSQESF
NLFVRSHLKSVKNPEKLTDERLERLYQSYGPGAYDLPDQGFIAKVHPLDLWLMGYLLNNP
DAKFSQIVKASEFERQEVYSWLFKSRHKSARDSRIRTMLEIEAFLDIHQRWQKVGYPFDH
LVPSLATAIGSSGDRPAALAELVGTILNDGIRQPALRVDSLDFAVDTPYETRLVSNPDNG
KRVMPVEVARALRGALSQVVDAGTAKRVAGSFKLADGTPLAMGGKTGTGDNRIEAIGSGG
RVISSKSINRTATFVFYIGDSHFGTLTAFVPGASAQNFKFTSALPVQVLKGMAPFLSPYL
QPGSHTQCKPLVARQ