Protein Info for Pf6N2E2_468 in Pseudomonas fluorescens FW300-N2E2

Annotation: DNA alkylation repair enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 PF08713: DNA_alkylation" amino acids 121 to 238 (118 residues), 28.1 bits, see alignment E=8e-11

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a3391)

Predicted SEED Role

"DNA alkylation repair enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YUG7 at UniProt or InterPro

Protein Sequence (367 amino acids)

>Pf6N2E2_468 DNA alkylation repair enzyme (Pseudomonas fluorescens FW300-N2E2)
MTTSTTASPALKEIFNSARLEHIANEMRAVYPAFDAKAFLHMANDGLAELSVMQRMARVS
ECLHAVLPLGYEASLEVLRALAPRLNSMFVSMFLPHYVASYGRHRFDVSLDALKYFTRFG
SSEFAVRHFLRDDLERTLKVMHDWALDANEHVRRLASEGSRPRLPWSFHLEPIQANPDLA
AAILDTLKADDSLYVRKSVANHLNDVTKQHPDWVLDQIEGWPLQDRHTAWIARHALRSLI
KQGNPRALGVIGVGGKAQVQVLDLQVTPAVIRLGEQVTLSFTVQSTLGQSQRLVIDYAVD
YVKASGGTSAKVFKLKTFDLPAQGCVNLSRSQHIRELTTRKHYAGRHAVHLLVNGERLGS
TAFDIVP