Protein Info for Pf6N2E2_4671 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG00956403: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 701 transmembrane" amino acids 20 to 36 (17 residues), see Phobius details amino acids 46 to 63 (18 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 374 to 395 (22 residues), see Phobius details amino acids 400 to 417 (18 residues), see Phobius details amino acids 423 to 441 (19 residues), see Phobius details amino acids 447 to 463 (17 residues), see Phobius details amino acids 470 to 488 (19 residues), see Phobius details amino acids 494 to 516 (23 residues), see Phobius details TIGR01667: integral membrane protein, YccS/YhfK family" amino acids 1 to 697 (697 residues), 915.5 bits, see alignment E=2e-279 TIGR01666: TIGR01666 family membrane protein" amino acids 1 to 695 (695 residues), 755.9 bits, see alignment E=3.9e-231 PF12805: FUSC-like" amino acids 49 to 333 (285 residues), 367.7 bits, see alignment E=5e-114 PF13515: FUSC_2" amino acids 390 to 508 (119 residues), 83.9 bits, see alignment E=1.7e-27 PF04632: FUSC" amino acids 394 to 676 (283 residues), 45.2 bits, see alignment E=8.8e-16

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a5254)

Predicted SEED Role

"FIG00956403: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161H3Q0 at UniProt or InterPro

Protein Sequence (701 amino acids)

>Pf6N2E2_4671 FIG00956403: hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
VRVFIALTGSMGLCWYLDEMGLLIPLFLGIIASALAETDDSWQGRLNALAVTLVCFTVAA
LSVELLFPYPVLFIIALALAAFGLTMLGALGERYGAIASATLILSVYTMIGVDQRGGAVN
DFWHEPLLLVTGAAWYGLLSVLWQALFSNQPVQQSLARLFRELGRYLKLKSSLLEPIRQL
DVEARRLELAQQNGRVVAALNSAKEIILHRVGNGRPGSKVSRYLKLYFLAQDIHERASSS
HYPYNALAEAFFHSDVLFRCQRLLRQQGKACQALAESIQLRQPFVYDDTFAEALNDLHAS
LEHLRIQSNPAWRGLLRSLRALSVNLATMDRLLSDASNPDALADATDSSLLDRSPRNLKD
VWLRLRTQLTPTSLLFRHALRLPLALSVGYAMVHLIHPSQGYWIILTTLFVCQPNYGATR
RKLGQRIIGTAIGLTVAWALFDLFPNPLVQSSFAIAAGVVFFTNRTTRYTLATAGITIMV
LFCFNQVGDGYGLLLPRLFDTLLGSLIAGLAVFLFLPDWQGRRLNKVLANTLTCNSIYLR
QIMQQYAAGKSDDLAYRLARRNAHNADAALSTTLANMLMEPGHFRKEADVGFRFLVLSHT
LLSYLSGLGAHRGTELPTEVREQLIDGAGVKLAASIDEIAQGLASKQPIAIQSDEEEALA
SELERMPDEIDEGQRLVQTQLALICRQLGPLRTLAAHLMKA