Protein Info for Pf6N2E2_4560 in Pseudomonas fluorescens FW300-N2E2

Annotation: probable integral membrane protein NMA1899

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 69 to 90 (22 residues), see Phobius details amino acids 99 to 124 (26 residues), see Phobius details amino acids 167 to 192 (26 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 252 to 277 (26 residues), see Phobius details PF11067: DUF2868" amino acids 142 to 438 (297 residues), 342.1 bits, see alignment E=2.1e-106

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a5359)

Predicted SEED Role

"probable integral membrane protein NMA1899"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A1P2 at UniProt or InterPro

Protein Sequence (455 amino acids)

>Pf6N2E2_4560 probable integral membrane protein NMA1899 (Pseudomonas fluorescens FW300-N2E2)
VTVLQNLWLTETIRLREEHAGPLEDQEANRLARAAGGDLATRIHHRARWLAERDGLTEAL
RHWLQGARLALIALVLIAIISGAGLGFAALGDGQAPVNVFWALGSLLGLNLILLISWALG
LIFAGEQGATLGRLWLWLSEKLARDAKAAQLAPALLLLLQRHKLNRWALGVLVNGLWLLA
MLSALVIVLMLMATRRYGFVWETTILGGETFVAMTQALGALPALLGFSVPTVEMIRASGD
AALNIESARQAWAAWLVGVLLVYGLLPRLCLALLCLWRWRRGRATLRLDLNLPGYAQLRE
RLMPSSERLGVNDAAPAQLHPIENAVSAINSDGALLVAIELDDRPWPPKLPETVKSAGIL
DSRESRHKLLEQLSRFAPARLAIACDPRRSPDRGSLALIAELARSASATRVWLLQAPPGE
ALDAERLGDWHTALQQLQLPFADCMPLNWLETGHD