Protein Info for Pf6N2E2_4 in Pseudomonas fluorescens FW300-N2E2

Annotation: Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2166 PF00668: Condensation" amino acids 48 to 494 (447 residues), 392.4 bits, see alignment E=5.4e-121 amino acids 1114 to 1556 (443 residues), 364 bits, see alignment E=2.2e-112 PF00501: AMP-binding" amino acids 518 to 862 (345 residues), 317.7 bits, see alignment E=1.9e-98 amino acids 1577 to 1925 (349 residues), 314.8 bits, see alignment E=1.4e-97 TIGR01733: amino acid adenylation domain" amino acids 538 to 936 (399 residues), 437.4 bits, see alignment E=4.8e-135 amino acids 1597 to 1998 (402 residues), 453.7 bits, see alignment E=5.4e-140 PF13193: AMP-binding_C" amino acids 920 to 1003 (84 residues), 44.9 bits, see alignment (E = 3.6e-15) amino acids 1982 to 2062 (81 residues), 36.4 bits, see alignment (E = 1.7e-12) PF00550: PP-binding" amino acids 1030 to 1094 (65 residues), 60.5 bits, see alignment (E = 3.1e-20)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2166 amino acids)

>Pf6N2E2_4 Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules (Pseudomonas fluorescens FW300-N2E2)
MDKSVALRIAKRFITLPLDKRRLYLEKMLEEGVSPANLPIPEVRSGFEHIALSYAQERQW
FLWQMDPHSSAYHIPSALRLKGPLDVAALERSFNALVERHESLRTTFIEHGEQAVQVIHP
HMPLRIAVHALPAGSPASQDDSIKAFVEAQSARPFDLRQGPLLRVSLLQIAEDDHVLALI
QHHIISDGWSMQVLVDELVRYYAADTAGQPLELPELTVQYADYAIWQRHWLEAGERERQL
AYWLQTLGGEQPVLELPLDHPRPPVRSFRGARLDLNLSPELGAALKQLAQREGASLFMVL
LASFQALLHRYSGQPQIRVGVPVANRNRVETEGLIGFFVNTQVLSADVDGQLPFDRLLAQ
VKQSAMAAQAHQDLPFEQLIEALQPERSLSHSPIFQVMFNHQTASDTQDRQLQLPRLSIE
DLVWEGRTAQFDLTLGTYETEQGVAAELTYATDLFEAQTIERLAHHWQNLLQGIVETPQQ
RIGELPLLDAAQQRLTQQDWYRVADHGAGTGCVHWRIAEQARQTPDALALTIDGQTLTHG
QLDARANQLAHRLMALGVTPDQPVGIAVERSVEMIVGLLAILKAGGAYVPLDPAYPEDRL
AYMIEDSGIELLLTQARLQALLPIPATLQTLLLDQPDAALQAAPRSCPVVPLTAEHLAYV
IYTSGSTGKPKGVMVRHGALSNFVVSMIAQPGLVASDRMLSLTTFSFDIFGLEIYGPLSA
GASIVLTGQNVHQDPQAVLALIERHDVTVLQATPSSWRMLLDHEQSALLAGRTFLCGGEA
LPLELAQRLLALSPKVWNLYGPTETTIWSAVHPLSPESSRPFLGKPLDNTALYIVGSDLT
LNPPGAPGELLIGGEGLARGYFQRPALTAERFVPDPFSRTGERLYRTGDLTRYRAEGVVE
YIGRIDHQVKIRGLRIELGEIEAALLAQTSVRETVVVAHEGPTGAQLVGYVVPATAEVLG
AEAEAEAALRASLKTALKAQLPEYMVPAHLLFLAQLPLTPNGKVDRKALPAPDASELQRA
YVAPRSQREQQVAQIWQEVLKLERVGLHDNFFELGGHSLLVTQVVSRVRRLLDIEVPLRS
LFEYSTLQDFVAALDAGSGPQPQAMVAVARDQPLALSFAQERQWFLWKMDPDSAAYNIPT
ALRLRGTLDKIALRRSFEALVQRHESLRTVFVEDDGRTCQVIRPQGHVSFVEQRLSAADE
ASIQAFLEEQTQRPFDLLNDALLRVALLELGEQDHVLALTLHHIASDAWSLQVMVDDLMS
LYSAFTQGLPAQLPVLEVQYADYAVWQRQWMAAGEQDRQLAYWTAQLGSEQPLLELPTDH
PRPAQQSLRGARLPIVLDPALSDALKALARRENVTLFVLLLGSFQALLHRYSGQADIRVG
VPIANRQRLETERLIGFFVNTQVLRAEFHSDLTGADLLQQLKQTAMAAQMHQDLPFEQLV
DALQPQRNLSHSPLFQAMFNHRNETASVFEDALPGLAVEPLGWAQRTAQFDLSLETTDSP
QGLHAALIYATDLFEPATLERMGQHWLNLLHGLVQDLHRPVAQWTLLDAVERRRLLVDWN
ATAVAYPLDRSVQGLIEEQVRRTPDAPALVFGEQRLSYGELNARANRLAHTLIEHGVGPD
VLVGIAVERSVEMVLGLLAILKAGGAYVPLDPEYPRDRLAYMFEDSGIGLLLTQQHLLDQ
LPIPQGIDSLVLDLPDDGVYAGRDTNPDVVVDGENLAYVIYTSGSTGKPKGAGNRHSALV
NRLCWMQQAYGLDATDSVLQKTPFSFDVSVWEFFWPLLTGATLVMAAPGAHRDPAQLIEL
ITAQRITTLHFVPSMLQAFVQDPHVAECTSLKRIVCSGEALPVDAQQQVFAKLPNAGLYN
LYGPTEAAIDVTHWTCVEEGRDSVPIGQPIANLGTYILDDELSPVPVGVIGELYLAGEGL
ARGYHRRAALTAERFVTGPFGHGQRLYRTGDLARYRTDGVIEYAGRMDHQVKIRGLRIEL
GEIEARLAEHDDVRETVVIAQGGSLLVAYVVPTHAELLSAEEAVRQALQGRLKAHLSQSL
PDYMVPQHWLWLEKMPVSPNGKLERKALPPSRSQRQPQGLRRSAYRHGTGAGRYLAKRAR
ASASGCQRQLLRTGGAIRSSPSRWSAGPVRPGSISAPRICSSTRPSKVSPAWRPWMTAAP
ASTRAR