Protein Info for Pf6N2E2_3436 in Pseudomonas fluorescens FW300-N2E2

Annotation: Putative toxin subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1495 PF03534: SpvB" amino acids 32 to 303 (272 residues), 275.7 bits, see alignment E=8.4e-86 PF12256: TcdB_toxin_midN" amino acids 633 to 805 (173 residues), 127.3 bits, see alignment E=8.7e-41 PF12255: TcdB_toxin_midC" amino acids 854 to 1001 (148 residues), 141.5 bits, see alignment E=4.1e-45

Best Hits

KEGG orthology group: None (inferred from 73% identity to pba:PSEBR_a704)

Predicted SEED Role

"Putative toxin subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A0L1 at UniProt or InterPro

Protein Sequence (1495 amino acids)

>Pf6N2E2_3436 Putative toxin subunit (Pseudomonas fluorescens FW300-N2E2)
MSEHSTMPVNAPSLPKGGGAIQSIGKGWSAIGAHGTASYEIALPISPGRGFAPSLSLGYA
SSAGNGVFGIGWGLSLPCVARWTAQGVPAYTEEDEIIGPDAVVWLPERDPQGAIRSTRID
RYNRLALNKTYTVIRYFPRIESRFERIEYWSSDKETPGFWLVHDADGSLHVFGKSPSARR
ADPLDARRVGEWLLEESLNAHGEHILYQYKADVTAQRYLSRVCYGNFKADADLYLWEADR
LKAVQWHFELVFDYGERSTEYQRKPNYEGHQWLARDDAFSSFAYGFELRTERLCRQVLMF
HRFPDEWGTAPVLVRRVLLDYRQTSLGYHQLTAAHDQAFGDSTTADHRPPVEFSYSEFKF
PLERPDWQPWQNMPGLNENQGFQLVDLYGEGLPGVLHRGDGGWYYREPMRAKANSNEVAY
GQWRALPRIPVADPAKPLQQSLSDLTGDGRLDWIIAQPGWSGFFSLGPERNWSDFATFNA
FPAEFFNPQGQLADLMGAGLSDLVLIGPRSVRVYANQQENGFSAAREISRGEADDALPLI
SVSPSELVAFSDMLGSGQQHLVRIRHNEVKCWPNLGHGRFGNGIVLGSPGLAYETFDASR
IRLADLDGSGATDLIYLQADQALIFMNRGGNGFSPPVALPWPQGLHYDRLCQVSIADLQG
LGCSSLVLSLPHRGNQHWRCDFVSAKPYLLTGTNNNMGTANSIRYRSSAQEWLDEKAERV
AADRPLACHLPLVVHVVSNQTQLDEITGNQLLQSFTYRQGYYDGIEREFRGFGLLLQTDE
QTNPDDAESPGFTTPCLTKNWFHTGQAVDLPHIGYSHADPIAVAPGKTLLSQYLPETGSD
TPIVSPTTATTLEMSRALSGYLLRSEVFGVDTRRGNRTLYSVQENRYRLRLLQAPEGNRR
HARMLPLLLESIHYQYEGLTDDPQCQHTLNLQYDAYGSLTHSVNVHYARRKNLDDTPPFS
DADQQRWWRDAHDPAQQFHYLTETCAEYIHLPAPQGWRLGLPYRQRTHALKKPKAPETGG
LSTRDMTYERFIELTGETAWITQSVLTGLSVQRYKDASSTQTLPDGVANFEALGDHMETA
ELDETALKAFHLLPQTSRPKGKLLERIGYHRMDAFLPATPLLDKLWSVKRDFATYAPLEG
FYKIQTQQASEHHGVTAFSYDNYHCFITAFKLPDGCVTQALYDYRSLLPRRITDPNGNVQ
EGLVDAFGQVLATTLYGNENNIPVGFKPIAQFKRPRFNRPTEAIEQCQDALQEAATALYY
TPFSWMGCVSNAALADGDWLARCVLNRDLLPSGHIRASARTRLADLQTLCADDLKLKNEM
DAATREPVHIAALVADRYPDDDQQQIRIAITCFDGFGRTLQSKQRVEPGMAYVVTSQGAL
TLKNGKPMEQTTATRWRVSERVEYNNKGLPIRLYRPYFADQHRYINDASLRQFGHCDQQF
YDALGRPTRTRLAAQAGLSYMRRHTRHAWYTLDEDENDTLEEVMAEQAPAIGGEA