Protein Info for Pf6N2E2_2976 in Pseudomonas fluorescens FW300-N2E2

Annotation: Type IV secretory pathway, VirJ component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF06057: VirJ" amino acids 225 to 413 (189 residues), 267.6 bits, see alignment E=3.4e-84

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a1138)

Predicted SEED Role

"Type IV secretory pathway, VirJ component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A0N6 at UniProt or InterPro

Protein Sequence (420 amino acids)

>Pf6N2E2_2976 Type IV secretory pathway, VirJ component (Pseudomonas fluorescens FW300-N2E2)
VAALLVLAVILGGGYWYWNRPAPQPTLEQLAPTDGVAMTRVIPGTKPRAQVLVAVNEDQK
LSDTQLTTLSRSGSAQIVQVILPKDCLLQGRALQTGLRQLQGPATLVSGIGPGAVLAWRW
LAEQKDDKAKAVSVDLALEKPGCTHLLPKSAAHGHWLVAWNDNPDDTSAGFVRDQSNAET
SISDYDINLPQVLNNELRKILVGTDKAKGGLSIPVVEVPASQTRDTVTLFLSGDGGWRDL
DRDVADEMAKIGYPVVGIDTLRYYWQHKSPEQSAADLTELMQHYRQVWGTKRFILTGYSF
GADVLPAIYNRLPATEQQRVDAIILLAFARTGSFEIEVEGWLGNAGTEAATGPEMAKLPA
EKVVCIYGGEEADESGCTDKTAVGEAIKLPGGHHFDENYPALAKRLIDEINKRQNKTAEQ