Protein Info for Pf6N2E2_2891 in Pseudomonas fluorescens FW300-N2E2

Annotation: Glucose ABC transport system, inner membrane component 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 19 to 42 (24 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 110 to 130 (21 residues), see Phobius details amino acids 159 to 184 (26 residues), see Phobius details amino acids 205 to 230 (26 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 88 to 285 (198 residues), 52.2 bits, see alignment E=3.3e-18

Best Hits

Swiss-Prot: 36% identical to Y1215_PYRHO: Probable ABC transporter permease protein PH1215 (PH1215) from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to pba:PSEBR_a1214)

Predicted SEED Role

"Glucose ABC transport system, inner membrane component 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZWQ2 at UniProt or InterPro

Protein Sequence (297 amino acids)

>Pf6N2E2_2891 Glucose ABC transport system, inner membrane component 1 (Pseudomonas fluorescens FW300-N2E2)
VFSKASPFDALQRWLPKLVLAPSMFIVLVGFYGYILWTFVLSFTTSTFLPNYKWAGLAQY
ARLMDNDRWWVASKNLALFGGLFIGITLVIGVLLAVFLDQRIRREGFIRTIYLYPMALSM
IVTGTAWKWLLNPGMGLDKLLRDWGWEGFRLDWLIDPDRVVYCLVIAAVWQASGFIMAMF
LAGLRGVDQSIIRAAQIDGASMPRIYWKVVLPSLRPVFFSAVMILAHIAIKSFDLVAAMT
AGGPGYSSDLPAMFMYSFTFSRGQMGMGSASAILMLGAILAIIVPYLYSELRTKRHD