Protein Info for Pf6N2E2_2807 in Pseudomonas fluorescens FW300-N2E2

Annotation: FIG126011: Hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details amino acids 350 to 370 (21 residues), see Phobius details PF04536: TPM_phosphatase" amino acids 57 to 178 (122 residues), 141.1 bits, see alignment E=9.8e-46 amino acids 393 to 466 (74 residues), 23.2 bits, see alignment E=3.1e-09

Best Hits

Predicted SEED Role

"FIG126011: Hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>Pf6N2E2_2807 FIG126011: Hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MEQLHASSYKPQAQVLRTAFAYGLKLAARSCAFVLLLWAFAITAQAELKFPALTGRVVDA
AQMLEPSVSAQLEAQLKAHEQATGEQVVVVTLADLQGSSIEDFGYQLGRHWGIGQKDKNN
GALLIVARDDRKLRIEVGYGLEDRLTDAQSSVIINQVITPAFKTGNFNKGISDGVAAMLV
VLGGSPLDEPAPAYSADGQQEQGDFVERHPGLFIFLVILFILTILVCQMLGILPTGSGGS
SRSGGSGGGFGGGGGGGFSGGGGSFGAAVRRAAGDNNNEQAFLTMALLTEHEQRKVAEAI
ARVERHTDAELVTVLAARADDYAYIPLLWASLLALVVPGVVHYLSGWLTMHSLLLVQWVS
FIVLCLMFRIPRITTHLIPRSVRHWRASNLARRQFLEQNLHHTVGSTGMLIFVCEAERYV
EILVDEGISKRLDNTCWDAIVAAFTQQVRQGQTLQGFVTCIEACGELLKEHVPVTQERNE
LPNRLVVLG