Protein Info for Pf6N2E2_2600 in Pseudomonas fluorescens FW300-N2E2

Annotation: Flagellar hook-associated protein FliD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 PF02465: FliD_N" amino acids 13 to 111 (99 residues), 74.3 bits, see alignment E=1.5e-24 PF07196: Flagellin_IN" amino acids 131 to 185 (55 residues), 39.3 bits, see alignment 9.3e-14 PF07195: FliD_C" amino acids 223 to 457 (235 residues), 165.9 bits, see alignment E=1.6e-52

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 66% identity to pfl:PFL_1631)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165Z9T4 at UniProt or InterPro

Protein Sequence (477 amino acids)

>Pf6N2E2_2600 Flagellar hook-associated protein FliD (Pseudomonas fluorescens FW300-N2E2)
MASPILPGLGLGSGLDTTAIVKALVDSDKAAKQGQIDRATKTNTANISGIGTLKSLLATF
QSALESLGSTTSPQFTGVAATSANTSALTVTAGNSAVSGTYSVNVTQLATSSKVATAAFA
GGASSAVEAGTLTISQSGKDYTLDIPADATLQSVRDAINSKYSSSGLTANIVTDNFGSRL
VVGSTKTGAGSDISLSGIASLAANGSVEMGTPSATSSGSIGLAKDAVFTVDGLSMTSPTN
KLDNVISGLNMTLLVAGSGPTTVTVATNADGLKASIQKFVDAYNAIAKAVTSLTKPSTDA
NGNSVPAALTGDSLPRSLLAAIRAPLSETGAGDKLTVLSQLGITTNQTTGALDFNSAKFT
EALNTKQLGGEVQTLFTGENGLIERMQNALKPYTETGKKDSNGKPVDNILTARSKNLEIL
KAKLGEDQLALDRRIETLTAVLTKKYNDMDTLVGRLKATASNITSMFEALTAQQKNS