Protein Info for Pf6N2E2_255 in Pseudomonas fluorescens FW300-N2E2

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 78 to 98 (21 residues), see Phobius details amino acids 105 to 125 (21 residues), see Phobius details PF07681: DoxX" amino acids 13 to 95 (83 residues), 40 bits, see alignment E=2.6e-14

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a3601)

Predicted SEED Role

"DoxX family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YPK2 at UniProt or InterPro

Protein Sequence (137 amino acids)

>Pf6N2E2_255 DoxX family protein (Pseudomonas fluorescens FW300-N2E2)
MNMTDERPLQDLGLLFLRLSGALFLLWVHGLPKLLHYSVELTRIEDPFHLGAAPTLVLAI
FAEVLCPLLIMAGVLVRLACLPILFLLAVALLVVHPQWSLEEGQFGWLLLIIFTSVFIAG
PGRLAMNTRFVGVLRHV