Protein Info for Pf6N2E2_2504 in Pseudomonas fluorescens FW300-N2E2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 12 to 45 (34 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 134 to 152 (19 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 195 to 213 (19 residues), see Phobius details amino acids 219 to 233 (15 residues), see Phobius details amino acids 240 to 260 (21 residues), see Phobius details amino acids 294 to 299 (6 residues), see Phobius details amino acids 304 to 306 (3 residues), see Phobius details amino acids 352 to 378 (27 residues), see Phobius details amino acids 387 to 405 (19 residues), see Phobius details amino acids 411 to 433 (23 residues), see Phobius details TIGR04370: oligosaccharide repeat unit polymerase" amino acids 55 to 401 (347 residues), 52.4 bits, see alignment E=2.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZZN2 at UniProt or InterPro

Protein Sequence (445 amino acids)

>Pf6N2E2_2504 hypothetical protein (Pseudomonas fluorescens FW300-N2E2)
MMNSLVSKLQVFLFGIFMLFLIGVVDSIPVIVTLVYCYTGLIVFLYAKKGVADPRVFPLA
FMSVYFTFFPLRAYLYGSENLPFDEGVLILSLRLQFIAMLVFVAVSNLLISNARQVEIST
FCSQQVRSTSSERLLFVFTLPFVLYSLAIILTSDATSKREVLDSFSSVKIISDFSILILT
VLVFLRAARIGRFFYKDLFLMLYLVFCVFYVLLTGERDSLFKLLFGFMIIYYDRRGNFSF
LKMIAIFGALLFVVPVSQYFKSVLLSGTVNFDRFGGDLILYSEFMSSSRNFYSLLVFDAG
QNISFLLSDVVRAFVPTALLGDYGVQSTVAWFDRVFRPEHGFDGTSGWGFTIVGFGYIVG
GLAGIVLIMAFYAWLLAFLYNRRWCSLYWYAFYILALAAFVYALRADLANLLSQVFKISG
LCVLFVFMAHYLLRRPSGSADLNKG