Protein Info for Pf6N2E2_2358 in Pseudomonas fluorescens FW300-N2E2

Annotation: Type III secretion host injection protein (YopB)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 PF06511: T3SS_TC" amino acids 122 to 354 (233 residues), 196 bits, see alignment E=6.4e-62

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165Z840 at UniProt or InterPro

Protein Sequence (366 amino acids)

>Pf6N2E2_2358 Type III secretion host injection protein (YopB) (Pseudomonas fluorescens FW300-N2E2)
MEITRFIQTPVVLLPNIDATVDTPLPVDIPVEVQTVSSLTQLLDRSVNALNRSLANLLRG
PFNAKSLEGMTTESMAQLIPELLEQIHAKRDRSHLWAQRVRQCCAVMSHSMKSTLLDDSR
LRQLNEEQGEILRSLKQAVDQDKPFEIAEALDAGINSSNDFFEKLLELIDLIKNGYLAGY
EHIIKAYTDFFADFNALITAKMKDWVEGANDGKEVELNVDALRDALTTLLEKYTHPNSES
MLFPNPDSVGASKEEAEKWLKALGLPASCLKKNPPPGSGWCVVIDTSPLTTMISSLASYS
GTVKWDTAKYNQWQTGFNAQEERLKNMLQSLTQKYSNANSYHDNFNKTLSAHLNQFADML
RAMLNF