Protein Info for Pf6N2E2_2115 in Pseudomonas fluorescens FW300-N2E2

Annotation: Major facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 transmembrane" amino acids 58 to 79 (22 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 123 to 142 (20 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 182 to 205 (24 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details amino acids 351 to 367 (17 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details amino acids 405 to 428 (24 residues), see Phobius details amino acids 440 to 459 (20 residues), see Phobius details PF07690: MFS_1" amino acids 63 to 425 (363 residues), 169.8 bits, see alignment E=4.2e-54

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a1902)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZW13 at UniProt or InterPro

Protein Sequence (480 amino acids)

>Pf6N2E2_2115 Major facilitator family transporter (Pseudomonas fluorescens FW300-N2E2)
LSSKKFKLYDVYQHRHLHDAPHKNNEWEKNQVNTSSLKANAGADPVLLSAIAKVKRHILP
LFVIMFIVNYIDRVNIGFVRAHMEHDLGIGAAAYGLGAGLFFVGYALFEVPSNILLQRIG
ARIWLTRIMLTWGLVAAAMAFIQNETHFYILRFLLGVAEAGFFPGVIYYFTRWLPGVERG
KAIAIFLSGSAIASLISGPLSGLLLQINGLGMHGWQWMYFIEGMFSVCLCVFVWFWLDSK
PHDAKWLSREEQDVLVKTIDDEQRAREAASPIKLSIGQLLKDRQIILFCLIYFFIQLTIY
AATFWLPSIIKKMGELSDIQVGMFNSIPWLLSIVGMYAFASLSAKWKFQQAWVATALLIA
AAGMFMSTTGGPIFAFVAICFAALGFKSASSLFWPIPQAYLDARIAAGVIALINSVGNLG
GFVAPTTFGLLEEHTGSIQGGLYGLAATSIIAAIIVFAARNTPKPKSATTPANPPAASHV