Protein Info for Pf6N2E2_2082 in Pseudomonas fluorescens FW300-N2E2

Annotation: Integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 47 to 71 (25 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 123 to 139 (17 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 61% identity to pfl:PFL_4910)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZXL0 at UniProt or InterPro

Protein Sequence (217 amino acids)

>Pf6N2E2_2082 Integral membrane protein (Pseudomonas fluorescens FW300-N2E2)
MSDEPVLTQSAGGIAVKIAALLGWFALILQLYLILTSRWQGGKSLWGAVDIFFSYFTVLT
NILVAVVLTYAATSGDSALRRFFLKPTVQGGVAAAIILVGVAYNLLLRNVWNPQGLQWVA
DELLHDVMPVLFVVYWWFCVPKGTLQWQDVWPWLIYPLVYFIYALVRGYFVGAYPYPFIE
VDTLGYPRVFLNAVMVLLGFVVVSLVLIALDRWKGRH