Protein Info for Pf6N2E2_2067 in Pseudomonas fluorescens FW300-N2E2

Annotation: cis/trans isomerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 763 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF06934: CTI" amino acids 81 to 762 (682 residues), 969 bits, see alignment E=9e-296

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a1947)

Predicted SEED Role

"cis/trans isomerase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZYN8 at UniProt or InterPro

Protein Sequence (763 amino acids)

>Pf6N2E2_2067 cis/trans isomerase (Pseudomonas fluorescens FW300-N2E2)
MPYRVLFGSLLLLLCFTAAAGSRAPAISYTRDIQPIFTEKCVACHACYDSACQLNLGSGE
GAARGASKLSVYDGERRQAAEPTRLFYDASGQRAWQRKGFYSVLDAQGSQAALMARMLEL
GHRTPLQPNAKLPEEIVLGLNRENSCAMPDQFNEYAGAHPKEGMPLAVTGLTDQQYQTLQ
RWLAAGAPIDQQALAPSAAEALQVVQWENLLNAPGARESLVGRWLFEHWFLAHIYFKDGE
PGHFFQWVRSRTPTGQPIDLINTRRPNDDPGTRVYYRLWPVQGVIVHKTHITYGLSAAKM
GRIKSLFYSGKWQVTALPGYGPERRANPFSTFEAIPAQARYQFMLDNAEYFVRTFIRGPV
CRGQIATDVIRDNFWALFQAPEHDLYITDPNYRGQATPLLAMPGQNDDVGSVLSLWLDYR
DKRNEYEALRRDVYADAPAPSWSTLWAGNDNALLSIFRHFDSASVNKGLIGEVPQTMWLF
DFPLLERTYYQLAVNFDVFGNVSHQAQTRLYFDLIRNGAEQNFLRLMPADSREGYLDDWY
QAGGKFKMWLDYEAIDDDKPTALKLDERDPKGDFTQQLLARYGELNARPDPINRCDGAYC
SRPNIDPALQNAEQALSRLVSRPAAGLKVIDQLPEATLLRVETASGHREVYSLLRNRAHS
NVAFLLGEEARYQPGLDTLTVYPGVLSSYPNFMFNIPAGQVSAFVEAMQGAQDAPAFERI
VERWGIRRSHPQFWYYFHDLSQYIQETEPLESGVLDMNRYQNL