Protein Info for Pf6N2E2_1971 in Pseudomonas fluorescens FW300-N2E2

Annotation: Protein with ParB-like nuclease domain in PFGI-1-like cluster

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 538 TIGR03764: integrating conjugative element, PFGI_1 class, ParB family protein" amino acids 45 to 302 (258 residues), 369.8 bits, see alignment E=4.3e-115

Best Hits

Predicted SEED Role

"Protein with ParB-like nuclease domain in PFGI-1-like cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZYF4 at UniProt or InterPro

Protein Sequence (538 amino acids)

>Pf6N2E2_1971 Protein with ParB-like nuclease domain in PFGI-1-like cluster (Pseudomonas fluorescens FW300-N2E2)
VDYRSFKRSQLRSYASVASTFPTQDEASKRVSNAPCENAVSACSSDPEVETPMVVTLDCL
KPYDLDPRVTRNPKYDEIKASIRQRGLDSPPPITRRPGESCFRVRNGGNTRLSILRELWS
ETKDEQFYHLTCMFRPWPERGEIISLTGHLAENELRGGLTFIERALGVEKARELYELESG
AALSQSELSRRLTSDGYPVHQSHISRMRDAVHYLLPAIPNVLYGGLGRHQVERLAVLRRT
CAKIWDEHAKTKILTIDFASLFQEALMLFDGATADFSIDRAQDEVIGQMAHYLGVDYDTL
ALASEAGEKREQALTHVPSHRYAPCPPKTAASDTGLDLPTVPSIPAGPPTKTVQALKEPD
HPDASGSDRLQSIQALVARHTGGEPSLASDVLPFSQESLFPISDIWNIDPALDEPQRLRI
HISQFAREICQDVAQADLITEVDEGIGFRCRLETVPEHPSPLTLVALLETLTTNSSVPSV
PMEIGPLLLGSAHRDAQAYRLSDANLIKLFRLIRLARRLIDLKSEFGTDQDMHTKEDS