Protein Info for Pf6N2E2_1627 in Pseudomonas fluorescens FW300-N2E2

Annotation: Non-ribosomal peptide synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1261 PF00668: Condensation" amino acids 143 to 394 (252 residues), 63.3 bits, see alignment E=4.7e-21 PF00501: AMP-binding" amino acids 424 to 764 (341 residues), 245.3 bits, see alignment E=2.4e-76 TIGR01733: amino acid adenylation domain" amino acids 444 to 835 (392 residues), 321.8 bits, see alignment E=3e-100 PF13193: AMP-binding_C" amino acids 819 to 893 (75 residues), 38.5 bits, see alignment 4.4e-13 PF00550: PP-binding" amino acids 921 to 982 (62 residues), 56.5 bits, see alignment 7e-19 PF00975: Thioesterase" amino acids 1006 to 1238 (233 residues), 35 bits, see alignment E=4.5e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165Z2S2 at UniProt or InterPro

Protein Sequence (1261 amino acids)

>Pf6N2E2_1627 Non-ribosomal peptide synthase (Pseudomonas fluorescens FW300-N2E2)
MDLGLTLSPQQKQLAQANPQAWRWVRMQLSGVPEATVQQRLRDGLQQHQALRLRYQRPVG
ATGLRQRVVEPLDLRLSWREGRSGDGHDEQQWLLEAKAHCLAEQPDVLAWLLDDYLLLAV
PVYSLDQRSLIQLQEQLLGRAASFDTEPMQYGEYVEWINGLQLDEDAEQGTQFWRNLALQ
DVPGMRLIERYGIASGDHAVVRLKLAQTLPAALTALVAREGVAAEALALAAWGSLLGRLN
GQQHGQLGLQHDPRDDYEELSGAYGLFEQTLPMVVRVSEHSTWINLARPLARQLENAVAW
QEYVGQAQLLPEWRASFQTGLRVVHAPLLEGLQVLSFDTPVELQLQLTLDAQDSGELTLA
YDRGLYREEQMQVLLKRFAHWLEQLLQSPNGLITGVDPHLPEELRALPTRPVLAPDLDIV
ATVREHARTQPDRPALRYAGQMFSYAELDALSDRVAGSLRQAGVGHEHVVGLYLPRGAQM
LIAMLACFKVGAAYLPLDPQQPPLRLADIIEDARPTLLLYVEGLLPDTSVDTLCWSQACT
GPVFDSPVQGSAQDLAYVLYTSGTSGKPKGVQIEQGQLRHYVTQVTRALQLPEAGHYGLV
SSLLADLGNTVLFPAWLQGGCVHVLEQSTVTDARAFAEELQRYPLDVLKIVPSHLEALMG
EHAPNGILPRQVLVLGGEPLSEHLLSRLAQAKPACRLYNHYGPTETTVGVLWRAIDVSQG
VGDSALNQVLGDNRIHLLDDQQRAVPSGQAGELCISGASVGRGYVGGVGGGAFGVDPLSG
HRLYRTGDLALRQADGAVRILGRNDQQVKIRGFRLELAEVEQALLAQPGVLQAAVLLDGE
GDHGRLLAFVVKDDALSQTTEQLYAALARQLPDYMLPSGILALKTLPLNSNGKLDRKNLL
ERARQRLQNTRVAPVGELETAILAIWCEVLGVDELGVTDNFFNVGGHSLAAIKVVSLIRE
RLSLELPTNLLFERHTVRDLVHGLGNDHSGGPWHVLNDAHEHAPALLLVHGAQGHLQAYQ
PLVENLNGKAAVFGLAALEKGWDEDDMDVLLQQYVASIPVQLKQRPLVLLGWSLASRLAL
MLVPHLQAHGFSVEGLVVLDHDAQRSLAGEGDEAGQLIADFAFYCRTHAQPIGESLRERV
TGLLAGLDYAEGVARLLNDAQVRAHLQWGAADADLLTLLAQYRSIKMRLYEQALPTVDVP
LWLWRGNAHADLRAQWQAHTHQAVRQWTLDVGHHEMLAEPRLVESLLPLLLQTSAKVVSV
S