Protein Info for Pf6N2E2_114 in Pseudomonas fluorescens FW300-N2E2

Annotation: Polysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 434 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 42 to 65 (24 residues), see Phobius details amino acids 77 to 101 (25 residues), see Phobius details amino acids 114 to 137 (24 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 226 to 272 (47 residues), see Phobius details amino acids 289 to 313 (25 residues), see Phobius details amino acids 324 to 344 (21 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details amino acids 381 to 403 (23 residues), see Phobius details amino acids 410 to 418 (9 residues), see Phobius details PF01943: Polysacc_synt" amino acids 19 to 273 (255 residues), 45 bits, see alignment E=1e-15 PF13440: Polysacc_synt_3" amino acids 30 to 325 (296 residues), 64 bits, see alignment E=1.4e-21

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a3758)

Predicted SEED Role

"Polysaccharide biosynthesis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YJJ7 at UniProt or InterPro

Protein Sequence (434 amino acids)

>Pf6N2E2_114 Polysaccharide biosynthesis protein (Pseudomonas fluorescens FW300-N2E2)
MSRAHYLKHLALSMGTRLAMIGLRLLRNVLLARILGPSERGLFALLSTLPDLISAATSGG
LNCAVGYQAAQQRSMGLLLSQVLVFGCLLAGLLTLLVVALVREFGGELDITTQLGLLAWL
LLLAVPLTVLKSGLLTLHNASGGVGAFNALRLMESLAPLVLFLVLFWMWKDAALEAALIS
WLAGLSLVVLAGWMWLRRDHVVTLRWDRPHQNELLRYGARSHPDLLFQQVLLRSDFLFIG
ALLGSTALGHYAMASAAAELLLIVPEAVTTPLMKRLLQQDRDMQRLTPLALRLTATVMLG
ACLSMALIGQWLIVTLFGTAYQPAYPALLALLPGLFGLCYASILRLDLLGKDRPGTVSLL
MGVGALLNLALNLILIPRYGIVGAAAASSIAYLGVTVALLAMYCRLSGVALWQTLIILPS
DLLPMRQMLLGKST