Protein Info for Pf1N1B4_763 in Pseudomonas fluorescens FW300-N1B4
Annotation: Ferric iron ABC transporter, ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02010, iron(III) transport system ATP-binding protein [EC: 3.6.3.30] (inferred from 93% identity to pfo:Pfl01_4528)Predicted SEED Role
"Ferric iron ABC transporter, ATP-binding protein" in subsystem Iron acquisition in Vibrio or Transport of Iron
Isozymes
Compare fitness of predicted isozymes for: 3.6.3.30
Use Curated BLAST to search for 3.6.3.30
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A162ARH6 at UniProt or InterPro
Protein Sequence (369 amino acids)
>Pf1N1B4_763 Ferric iron ABC transporter, ATP-binding protein (Pseudomonas fluorescens FW300-N1B4) MSQTLLLNLRNLACGYQNQRVVQNLNLHLNAGDIGCLLGSSGCGKTTTLRAIAGFEPVHE GEIQLAGETISSAGFTLAPEKRRIGMVFQDYALFPHLSVAENIAFGIRKHPQKDRITEEL LELVNLKNLGKRFPHELSGGQQQRVALARALAPEPQLLLLDEPFSNLDGELRRKLSHEVR AILKARGTSAILVTHDQEEAFAVSDHVGVFKEGRLEQWDTPYNLYHEPLTPFVASFIGQG YFIRGQLSSPESVQTELGELRGNRAYTWPIGCAVDVLLRPDDIVYAPDSPLRAQIVGKSF QGASTLYRLQLSTGAQLESIFPSHADHLVGAEVGIRVAAEHLVLFQASGSTAAQIPVIES GVRRYSTAS