Protein Info for Pf1N1B4_702 in Pseudomonas fluorescens FW300-N1B4

Annotation: Transcriptional regulator PobR, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 158 to 169 (12 residues), see Phobius details PF02311: AraC_binding" amino acids 36 to 152 (117 residues), 34.9 bits, see alignment E=1.8e-12 PF12833: HTH_18" amino acids 210 to 289 (80 residues), 69.9 bits, see alignment E=2.9e-23 PF00165: HTH_AraC" amino acids 252 to 287 (36 residues), 32.4 bits, see alignment 1.2e-11

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfo:Pfl01_4477)

Predicted SEED Role

"Transcriptional regulator PobR, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MSL1 at UniProt or InterPro

Protein Sequence (303 amino acids)

>Pf1N1B4_702 Transcriptional regulator PobR, AraC family (Pseudomonas fluorescens FW300-N1B4)
MNKPDLPSIPVFKLYGESLDWPTPDLLHCETISKRSREHQWEIKPHRHADLCQLLFVFKG
QAELEIEGKRSQLTEPAILILPPLSVHGYRFSEDVEGFVVTLAAPLIAHLQAQLGNSMNA
LAQAESYPAGKDSEYLNSLFSALQSEYTGHQPAREMLMHSLVSVIMVWISRQVIQRQTAT
QRPQRAREYLNGFIQLVEETYRQHVKVEDLAHRLGISVSHLNGTCRELAGQPALQIMHER
QLLEAKRLLTYTSMTIYEMSDVLGFSDPTNFTRLFRRRVGISPKAFRDRLKADQDHADQD
NEA