Protein Info for Pf1N1B4_6003 in Pseudomonas fluorescens FW300-N1B4

Annotation: tgtA5 cluster protein 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 TIGR03187: DGQHR domain" amino acids 40 to 309 (270 residues), 146.3 bits, see alignment E=7.8e-47 PF14072: DndB" amino acids 46 to 364 (319 residues), 37.7 bits, see alignment E=7.1e-14

Best Hits

KEGG orthology group: None (inferred from 54% identity to bgf:BC1003_0010)

Predicted SEED Role

"tgtA5 cluster protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166R4Y7 at UniProt or InterPro

Protein Sequence (378 amino acids)

>Pf1N1B4_6003 tgtA5 cluster protein 1 (Pseudomonas fluorescens FW300-N1B4)
MRKGWYKSLNTAATPLSGGPFDEGRDSLLKFSAIKALQSPTHQVVSFAATVEQILAIASI
DRVKRDDRGALHGFQRPQVSKHIREIRDYLSRPDAVMPNAVVLAFTSGVRVVEGNGAYAE
IEVDISSGPPGFVVDGQQRLSALAGLEGSSFQLLVSALVCENQEELRRQFILVNNTSPLP
KSLVYELLPSVSGLPFRMTSRARAARIVEMLNYDDRSSLQGQIKQHTNPSGVIGDTSLQK
LVMNSLSDGYCREVIELSGGEDRCFLAISEFFQAVQEVFGNAWHGHTPKSSRLVHSAGII
SMGFVMEQLCATGAPLAPVFKLGLRKLQGYTAWTLDSGEWSFKTGNRPWNGVQNLHGDIH
LLTDHLTRVVRSSELVPS