Protein Info for Pf1N1B4_4940 in Pseudomonas fluorescens FW300-N1B4

Annotation: probable membrane protein YPO2362

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 transmembrane" amino acids 30 to 54 (25 residues), see Phobius details amino acids 69 to 92 (24 residues), see Phobius details amino acids 106 to 126 (21 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 167 to 190 (24 residues), see Phobius details PF04893: Yip1" amino acids 7 to 180 (174 residues), 123.6 bits, see alignment E=4.1e-40

Best Hits

Swiss-Prot: 38% identical to YOHC_ECOLI: Inner membrane protein YohC (yohC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 80% identity to pfo:Pfl01_2694)

Predicted SEED Role

"probable membrane protein YPO2362"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166QJY8 at UniProt or InterPro

Protein Sequence (203 amino acids)

>Pf1N1B4_4940 probable membrane protein YPO2362 (Pseudomonas fluorescens FW300-N1B4)
MSAHFVRLFTQPNFVWTDIRKDEEAHPRHYLAHLLVLALIPAACLFIGTTYVGWSLAENE
TVKLSTTSALQLCGLLYLSIIVGVVLMGLFIRWMSRTFDSRPTVNQCIGFAAYTVTPFFL
AGIAGLYPSRWLAITVLGAASLYSTFLLFVGLPIFMHERKEQGLLNAASVWGVGLLVLVT
ILVEMILLWFNYLGPEYLRVTGV