Protein Info for Pf1N1B4_3147 in Pseudomonas fluorescens FW300-N1B4

Annotation: Putative NADPH-quinone reductase (modulator of drug activity B)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13652: QSregVF" amino acids 22 to 132 (111 residues), 178.6 bits, see alignment E=1.6e-57

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfo:Pfl01_1180)

Predicted SEED Role

"Putative NADPH-quinone reductase (modulator of drug activity B)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z9E9 at UniProt or InterPro

Protein Sequence (141 amino acids)

>Pf1N1B4_3147 Putative NADPH-quinone reductase (modulator of drug activity B) (Pseudomonas fluorescens FW300-N1B4)
MLRLIVPTAAILLASSFNAQAASLSEQNLNRELRNVAVQSSVGTPRAINEDILDQGYTVE
GNQLINHLSVQSSHADKMRADPKAVYFQLGASVCRNDGFRKLMAKGAVMRYDFTEVKTNR
PVGSASFQESDCPKATPTKKK