Protein Info for Pf1N1B4_2846 in Pseudomonas fluorescens FW300-N1B4

Annotation: putative exported protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 981 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF05359: DUF748" amino acids 5 to 347 (343 residues), 293.8 bits, see alignment E=4.6e-91 amino acids 356 to 956 (601 residues), 733.5 bits, see alignment E=7.5e-224 PF05170: AsmA" amino acids 277 to 392 (116 residues), 31.5 bits, see alignment E=1.3e-11

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_4816)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NZN2 at UniProt or InterPro

Protein Sequence (981 amino acids)

>Pf1N1B4_2846 putative exported protein (Pseudomonas fluorescens FW300-N1B4)
MPKGLIRAIGALLTALALYSLLGFLILPGIALRIANQQLANYATTPATIQRIELNPFSLE
VTLWGLVIGEPGKEQVGFERLYANLQIDSLWTKALHLSDIELDKPKTEILFSKDGKLNLL
GLFKIPASEPTPVDPDAKPFPLRVERIKLAGGSLHFEDTRPSEPIEFLYDKLDFELKNLS
TLPEDSADMTLVAVGPAGGQIDWTGNFSLIPMASEGKLKITDGKMKSFWPYVRDAVPLAL
EDGVISLSTDYKLNLAKETELLLSNVAVSVAPFAIKTPDGRPLAKLERLDISETTVDLAK
QQVVVGKIRSKKLETWAALEADGQLDWQKLFASQPSKAANKANAEPASAPAVADSPKPEP
TAPSKPWQVLLKDVQLRDYQVHLADRKAQPAVALELGPLNLDLQNFDSLNGSPFNLKLDS
GVGKQGKITADGVVNLAPISAKLNVQTKDIDLRVAQSYINPFIRLELRSGMLGSDLAVDL
KSTEPLAFSVTGKAQVDQLHTLDTLKTRDFLKWQQLVLEGLNYQHGDSLSIDKVNLFQPY
ARFMINDDRTTNVDDLLIPQPADSGATTTAATKPAAGKEKPLGIHIGGIAINDGSANFAD
FSLTPNFATAIQQLNGKIGTIDSRQAKPASVDIKGKVDRYAPVTIKGSVNPFDPMASLDI
ATSFKRVELTTLTPYSGKFAGYRIRKGRLNLDLHYKITNGQLLAENKVVVEQLQLGEKVD
SPDAVSLPLKLAIALLKDVDGKISIELPVSGDLNNPQFSVMPIIWQTLRNLIVKAAAAPF
KMIGGLVSGGGSEDLGSVAFAPGSSDLSKDAEAALVKLSQALKERPALRLEIEGTAAKSS
DGPLIAEQRLEREYQYNYYKMLQRRGDKVPAQASLLDVPDNEKGPLLEGIYRTRLKTQPP
AEWKDLGKEERSKKMREGVIAFWSSSEVLLRQLGQERASSIKDYLVDKGQLADDRVYFID
ASLGEAESDGRVITPMHLDAE