Protein Info for Pf1N1B4_2556 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG00954311: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 137 to 163 (27 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 246 to 270 (25 residues), see Phobius details PF05656: DUF805" amino acids 126 to 237 (112 residues), 73.4 bits, see alignment E=1e-24

Best Hits

KEGG orthology group: None (inferred from 70% identity to pfo:Pfl01_5105)

Predicted SEED Role

"FIG00954311: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z878 at UniProt or InterPro

Protein Sequence (325 amino acids)

>Pf1N1B4_2556 FIG00954311: hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MSENRFKIVFDGALLPGVDVTTAKLNLAELFKSDVAAIERLFSGRQVALKRDLSHADAQT
YLQALTKTGIDARIETEPSIELNLSDVHEHAPASSQPVTADPDSPYAPPRASVGEALPEF
SALKAFSFVGRIGRLRFLAWTMALTLVTLGVGSVLAIFGFALISTDSTAGLILAGLLAFI
LVVVLAFISIQFSVQRLHDIGWSGWLWLLNLVPVVGSVFPFVIMIVPGNNTANRYGAPPP
PNSNAVRVLASLWLVFIAIMFVGGLTGGLTAIQDEYESATESTYQSSSMITDEVEVEPAD
DAEPAPNSSDDAAEAAEPPVDSAKE