Protein Info for PFLU_RS28000 in Pseudomonas fluorescens SBW25-INTG

Annotation: TldD/PmbA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 PF01523: PmbA_TldD_1st" amino acids 24 to 86 (63 residues), 29.6 bits, see alignment E=9.5e-11 PF19290: PmbA_TldD_2nd" amino acids 131 to 224 (94 residues), 22.4 bits, see alignment E=2.3e-08 PF19289: PmbA_TldD_3rd" amino acids 241 to 475 (235 residues), 89.1 bits, see alignment E=3.7e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU5687)

Predicted SEED Role

"TldD family protein, Beta/Gamma-proteobacterial subgroup" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K3D4 at UniProt or InterPro

Protein Sequence (480 amino acids)

>PFLU_RS28000 TldD/PmbA family protein (Pseudomonas fluorescens SBW25-INTG)
MFDHHATLKKHFSALRTRAEFFSLRYVRESGHYLAVRKNVAEPPHLNHDEGAMLTVRVNG
VEAYAATHDISLSGLQAALERAEQQARLIKPHALLDLRDHHVSSDVADYLSPDLDQPFAS
LSDCYQLLGSESAAVPQDERLVNWEVSLGLTHVEQIYLNNAGAELRQAQRFVFPGVNVTA
YDGNDSQSRTLGGSNFGQQGGFDVISRFGLIGAAPRIADEALQLLLAPNTPQGPRDLLLM
PDQMILQIHESIGHPLELDRILGDERNYAGTSFVKASDFGHLQYGSTLLNVTFDPDIPEQ
LASYSHDDDGTRASKQFLIREGLLLKPLGGALSQFRAGMGGVANSRACSWNRPPIDRMAN
LNIEPGDQSLAQLIGGIEHGILMSTNRSWSIDDARNKFQFGCEWGQLIENGELKGVVKNP
NYRAISAQFWRKLSAVGDASTFKVLGTPNCGKGEPNQVIRVGHASPACVFSDVDVFGGDA