Protein Info for PFLU_RS14095 in Pseudomonas fluorescens SBW25-INTG

Annotation: tail assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 transmembrane" amino acids 97 to 116 (20 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details PF06805: Lambda_tail_I" amino acids 11 to 92 (82 residues), 28.2 bits, see alignment E=1.1e-10

Best Hits

Swiss-Prot: 46% identical to TIPI_BPN15: Tail tip assembly protein I (gene) from Escherichia phage N15

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2891)

Predicted SEED Role

"Phage tail assembly protein I"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KA68 at UniProt or InterPro

Protein Sequence (197 amino acids)

>PFLU_RS14095 tail assembly protein (Pseudomonas fluorescens SBW25-INTG)
MQASAINYQPMTTVRLHGQLRQFGKSFRLSVKSPAEAIKALCVQIPGFERFLSNAKSRGL
EFAVFRDNRNIGEKELNYNGAGDIRIAPVVVGSKRGGILQTIVGAILIVVGVIFSATPFG
TPLIGAGIGLVAGGVIQMLSPQASGLKTSAAPENTPGYAFGSAKNTTASGNPVPLCIGER
RWGGAIISAEIYAEDRM