Protein Info for PFLU_RS01970 in Pseudomonas fluorescens SBW25-INTG

Annotation: cell division protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 transmembrane" amino acids 26 to 46 (21 residues), see Phobius details PF05036: SPOR" amino acids 155 to 224 (70 residues), 62.1 bits, see alignment E=2.6e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU0400)

Predicted SEED Role

"Cell division protein FtsN" in subsystem Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KAH2 at UniProt or InterPro

Protein Sequence (233 amino acids)

>PFLU_RS01970 cell division protein (Pseudomonas fluorescens SBW25-INTG)
MAAKKKPAPKRGASRYQAPAKKPIPGWLWMAIGLTVGAFVVFLMKLDPGQGDDVKRVKQE
QQKATKMAEANKTAPSPTAPVKPKYDFYTLLPESEVIVPPDAVPEKTLPTPQVPTTPVTP
AEAAKIDTARAQAALAGITPPPAPPVAETKAAPVTKFFLQAGSFPKQADADRVRAQIILL
GQSVTVESGTVKDATWYRVLVGPFSNREQLTVAQKQLAGAGFSNLLLQQRQSR