Protein Info for MPMX20_04593 in Enterobacter sp. TBS_079

Annotation: Porin OmpL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 228 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF06178: KdgM" amino acids 13 to 228 (216 residues), 221.4 bits, see alignment E=6.3e-70

Best Hits

Swiss-Prot: 66% identical to OMPL_ECOLI: Porin OmpL (ompL) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to enc:ECL_05109)

Predicted SEED Role

"Outer membrane sugar transport protein YshA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (228 amino acids)

>MPMX20_04593 Porin OmpL (Enterobacter sp. TBS_079)
MKRIVTALVVSSVSCSAVAGAYVETREAYNTASELHEVILRAGYNFDKGAGLMFTNAYNV
GKWDELKHSYNEIEGWYPLFRPTDKLTFQPGGLLNDSSAGSGGAIYLDTNYKFLDWFNLT
FRYRYNHNNYDTPDYNGQMDKNDTHEFANYWNFKVTDAFFYTFEPHFFQRVNDYHSKNGK
DHHWEITHKFSYKIDKNWLPYLELQWLDRWNDYNREQYRIRLGLRYSF