Protein Info for MPMX20_04563 in Enterobacter sp. TBS_079

Annotation: L-Rhamnulokinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 TIGR02627: rhamnulokinase" amino acids 7 to 459 (453 residues), 742.4 bits, see alignment E=7.7e-228 PF00370: FGGY_N" amino acids 7 to 242 (236 residues), 97 bits, see alignment E=1.4e-31 PF02782: FGGY_C" amino acids 253 to 440 (188 residues), 128.1 bits, see alignment E=3.8e-41

Best Hits

Swiss-Prot: 84% identical to RHAB_ENT38: Rhamnulokinase (rhaB) from Enterobacter sp. (strain 638)

KEGG orthology group: K00848, rhamnulokinase [EC: 2.7.1.5] (inferred from 87% identity to enc:ECL_05072)

MetaCyc: 77% identical to rhamnulokinase (Escherichia coli K-12 substr. MG1655)
Rhamnulokinase. [EC: 2.7.1.5]

Predicted SEED Role

"Rhamnulokinase (EC 2.7.1.5)" in subsystem L-rhamnose utilization (EC 2.7.1.5)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.1.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>MPMX20_04563 L-Rhamnulokinase (Enterobacter sp. TBS_079)
MTFRHCVAVDLGASSGRVMLATYDGKRQTLSLREMHRFVNCLQKQDGCEVWDIDSLEAAI
RTGLQKVCDAGIRIDSIGIDTWGVDYVLLDSNGERVGLPIAYRDSRTDGLMARAIAGLGK
ENIYGRSGIQFLPFNTLYQLRALIEQQPALVSRVAHALLIPDYFSYRLTGNMNWEYTNAT
TTQLVNINSDNWDEHLLAWTGASPSWFGTPTHPGNVIGQWMCPQGNAIPVVAVASHDTAS
AVIASPLAGNDAAYLSSGTWSLMGFESKTPYTSDAALAANITNEGGAEGRYRVLKNIMGL
WLLQRVLKEQNITDLPALIADTERLKACSFLINPNDDRFINPADMSAEIQAACVDAGQPV
PSKPAELARCIFDSLALLYAEILSELADLRGRPFTQLHIVGGGCQNQLLNQLCADACGIT
VVAGPIEASTLGNIGIQLMTLDELASVDDFRTVVSANATLTTFIPNPCHEIARYRAQFQQ
NRLTKELCA