Protein Info for MPMX20_02955 in Enterobacter sp. TBS_079

Annotation: putative inner membrane transporter YedA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 245 to 262 (18 residues), see Phobius details amino acids 268 to 289 (22 residues), see Phobius details PF00892: EamA" amino acids 13 to 140 (128 residues), 83.3 bits, see alignment E=8.9e-28 amino acids 150 to 284 (135 residues), 67.4 bits, see alignment E=7.5e-23

Best Hits

Swiss-Prot: 89% identical to YEDA_ECO57: Uncharacterized inner membrane transporter YedA (yedA) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 95% identity to enc:ECL_03240)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>MPMX20_02955 putative inner membrane transporter YedA (Enterobacter sp. TBS_079)
MRFRQLLPLIGALFSLYIIWGSTYFVIRIGVESWPPLMMAGVRFLSAGVLLMAFLLLRGH
KLPPLRPMLNAALIGLLLLAIGNGFVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIR
TRKLEWVGIGIGLAGIILLNSGGNLSGNPWGAVIILIGSMSWAFGSVYGSRIELPTGMMA
GAIEMLAAGIVLLIASTLTGEKLTAMPDLSGFLAVGYLALFGSVIAINAYMFLIRNVSPA
IATSYAYVNPVVAVLLGTSFAGETLSPVEWLALGVIVFAVVLVTLGKYLLPAKPVVTPCE
VEKP