Protein Info for MPMX20_01429 in Enterobacter sp. TBS_079

Annotation: Outer membrane usher protein FimD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 847 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF13954: PapC_N" amino acids 36 to 182 (147 residues), 142.8 bits, see alignment E=1.1e-45 PF00577: Usher" amino acids 200 to 759 (560 residues), 636.5 bits, see alignment E=7.2e-195 PF13953: PapC_C" amino acids 768 to 831 (64 residues), 84.2 bits, see alignment 6.7e-28

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 67% identity to esc:Entcl_3024)

Predicted SEED Role

"type 1 fimbriae anchoring protein FimD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (847 amino acids)

>MPMX20_01429 Outer membrane usher protein FimD (Enterobacter sp. TBS_079)
MYSHKKPFIHRLSSMLVILCGLALAIFAQQVMADDYFNPALLDIDNPQQGKTDLSVYEKG
PGQAPGKYQVNIFINNNKIDTRDVTFKLIKDAQGNHSLQPCFSLDELKNLGIKTRQYPPL
MAKGQCADINAIPAASATFQVRHQQLLLSIPQTALGQVPRGYIDPKTFDEGITAGLLNYS
ATASQSHARVQGEQDNSSQYVNLRPGLNVGAWRIRNYSTWNRSTTGNEEEHRFSSVYTYA
QRDIVAMKSDMTVGQSTSPSDVFDSVPYTGVELKSDTDMLPDSEKGYAPIIRGTAHSNAL
VMVRQNGYVIYQNTVAPGAFEINDLYPTGSSGDLQVTVKETDGSESHFVVPYASVPVLQR
EKNLRYSVTAGRYRSYDKDVEQTPFAEGSAIYGMPLGFTAYGGAQQSRHYQSRALGVGKN
LGDLGAFSLDVTRAKALLKKQQTSKGRSWRVRYSKDFVASGTHFSLAGYRYNSKGFYTLE
DTMESYTRSDDGSAPQQRRARTEATVDQTLPAGWGSVTLSLVKETYWSQSQDMTSMSVSY
NNSWHGVSYSLSYSMNKNTQDSDANGDDVMNDNQFSLNVSVPLDRWMHNTWATYNLNNTK
DGTTQNIGLNGTALKGDNLNWNIQEGLSSTGSGNSTSMNADYKATYGEVSGGVSQDKYQQ
TVNVGLQGGAIVHANGITLSQPLGETIALVKAPGTHGTHIANQTGVETDFRGYTVVPFVT
PYRHNTIALDTETLPDEADVTHAAYVVTPTRGAVVRASFNTRVGSRVLMTLTHNGKPLPF
GATVTTEDKDSEFIVGNDGQTYLSGLPKQGHLAVTWGQDASEHCEADYVLTDETEKTNIL
NAAAQCH