Protein Info for MPMX20_01060 in Enterobacter sp. TBS_079

Annotation: Inner membrane protein YlaC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 62 to 79 (18 residues), see Phobius details PF10777: YlaC" amino acids 1 to 151 (151 residues), 232.8 bits, see alignment E=7.7e-74

Best Hits

Swiss-Prot: 75% identical to YLAC_SHIFL: Inner membrane protein YlaC (ylaC) from Shigella flexneri

KEGG orthology group: None (inferred from 95% identity to enc:ECL_01229)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>MPMX20_01060 Inner membrane protein YlaC (Enterobacter sp. TBS_079)
MTEIQRLLTATIDDLNHREKRDNRPRFSISFIRKHPGLFVAMYAAWLATLIVMLKSETLV
DSVWLLVILFVVFNAFFFFDVNPRYRYEDIDVLDFRVCYNGEWYNTRYVPPELIESIMHS
PAVETVQKEKLQKMVSTKGQLSFYDVFTLSRPAAV