Protein Info for MPMX20_00362 in Enterobacter sp. TBS_079

Annotation: Insertion sequence IS5376 putative ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 PF01695: IstB_IS21" amino acids 25 to 217 (193 residues), 192.1 bits, see alignment E=2.3e-60 PF14532: Sigma54_activ_2" amino acids 73 to 198 (126 residues), 25.5 bits, see alignment E=2.8e-09 PF00004: AAA" amino acids 78 to 173 (96 residues), 22 bits, see alignment E=3.9e-08

Best Hits

Swiss-Prot: 50% identical to Y4PL_SINFN: Putative insertion sequence ATP-binding protein y4pL (NGR_a02000) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 67% identity to van:VAA_00278)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (223 amino acids)

>MPMX20_00362 Insertion sequence IS5376 putative ATP-binding protein (Enterobacter sp. TBS_079)
MVAADDLHLAELRGTAGSPAGAPLLQREVSKVNRLRRQSKLRLDAQPSQLDYRPERGLNR
QLVVQLLTGAYVHRHENVLITGPTGCGKTYVACALGEQACQQHIQVVYYRLTRLLDDLNI
GHADGSYQKQLLHLSKKDLLILDDWGLEKLNTRQASDLLEVMEDRYQRGSTIIISQLPVS
EWYKLVGNPTVADALMDRLLHNGHRVELRGESMRKLAQTDQTS